| Avila Jorge |
A compact embedding-based indexing for accurate and rapid classification in bacterial pangenomics |
| Rivals Eric |
An incremental algorithm for computing the set of all period sets |
| Renders Luca |
Automated design of efficient search schemes for lossless approximate pattern matching |
| Smith Caleb |
Brisk: Exact resource-efficient dictionary for k-mers |
| Martayan Igor |
Conway-Bromage-Lyndon (CBL): an exact, dynamic representation of k-mer sets |
| Wirtz Johannes |
Counting multiple-merger tree structures emerging in Population Genetics |
| Schmitz Johanna |
EpiSegMix: Discovering chromatin states using a flexible distribution hidden Markov model with duration modeling |
| Rizzo Nicola |
Exploiting uniqueness: seed-chain-extend alignment with Elastic Founder Graphs |
| Biagi Elena |
Finimizers: Variable-length bounded-frequency minimizers for k-mer sets |
| Uzuner Hamdiye |
Generalized uncertainty-aware haplotype quantification with application in HLA typing and virus analysis. |
| Luca Parmigiani |
Interpolating and Extrapolating Node Counts in Colored Compacted de Bruijn Graphs for Pangenome Growth Comparison |
| Hendrychová Veronika |
Mathematical model of phylogenetic compression |
| Romashchenko Nikolai |
Memory-frugal disk-based (phylo-)k-mer filtering for alignment-free phylogenetic placement |
| Draesslerová Dominika |
Metagenomic classification with maximal exact matches in KATKA kernels and minimizer digests |
| Rouzé Timothé |
Pangenomic k-mer distribution with low memory cost |
| Sgro Mattia |
PlasBin-flow on Pangenome graphs: improving bacterial plasmid binning in short-read assemblies |
| Depuydt Lore |
r-indexing without backward searching |
| Bonnet Konstantinn |
Strangepg: Toward Pangenome Scale Graph Visualization |
| Levallois Victor |
The Backpack Quotient Filter: a dynamic and space-efficient data structure for querying k-mers with abundance. |
| Vandamme Lea |
Tinted de Bruijn Graphs for efficient read extraction from sequencing datasets |
| Dubois Siegfried |
Towards an edit distance between pangenome graphs |
| Chikhi Rayan |
Work in progress for peta-scale sequence exploration |